Caldwell JM, Donahue MJ, and Harvell CD. (2018) Host size and proximity to diseased neighbours drive the spread of a coral disease outbreak in Hawai‘i. Proc. R. Soc. B 285 (1870), 20172265
Caldwell JM, Ushijima B, Couch CS, Gates RD. (2018) Intra-colony disease progression induces fragmentation of coral fluorescent pigments. Scientific reports 8 (1), 346
Silbiger NJ, O Guadayol, FIM Thomas, MJ Donahue. In press. A novel μCT analysis to calculate coral reef bioerosion and secondary accretion rates. PLOS One.
Caldwell JM, SF Heron, CM Eakin, MJ Donahue. 2016. Satellite SST-based coral disease outbreak predictions for the Hawaiian Archipelago. Remote Sensing. 8(2): 93. doi:10.3390/rs8020093
Nelson, CE, Donahue, MJ, Dulaiova, H, Goldberg, SJ, La F Valle, F, Lubarsky, K, Miyano, J, Richardson, C, Silbiger, NJ, Thomas, FIM. 2015. Fluorescent dissolved organic matter as a multivariate biogeochemical tracer of submarine groundwater discharge in coral reef ecosystems. Marine Chemistry. 177:232-43.
Donahue, MJ, Karnauskas, M, Toews, C, Paris, CB. 2015. Location Isn’t Everything: Timing of Spawning Aggregations Optimizes Larval Replenishment. Plos One. 10(6): e0130694. DOI: 10.1371/journal.pone.0130694
Silbiger, NJ and Donahue MJ. 2015. Secondary calcification and dissolution respond differently to future ocean conditions. Biogeosciences. 12. 567-578
Silbiger, NJ, Guadayol, O, Donahue, MJ, and Thomas, FIM . 2014. Reefs shift from net accretion to net erosion along a natural environmental gradient. Marine Ecology Progress Series. 515. 33-55
Guadayol, O, Silbiger, NJ, Donahue, MJ, and Thomas, FIM (2014) Patterns in temporal variability of temperature, oxygen, and pH along an environmental gradient in a coral reef. PLoS ONE 9(1): e85213. doi:10.1371/journal.pone.0085213
Thomas FIM, LT Kregting, BD Badgley, MJ Donahue, PO Yund. 2013. Fertilization in a sea urchin is not only a water column process: effects of water flow on fertilization near a spawning female. Marine Ecology Progress Series. doi: 10.3354/meps10601
Siple MC, MJ Donahue. 2013. Invasive mangrove removal and recovery: Food web effects across a chronosequence. Journal of Experimental Marine Biology and Ecology. 448: 128-135
Franklin EC, RA Arinaga, PL Jokiel, MJ Donahue. 2013. Predictive modeling of coral distribution and abundance in the Hawaiian Islands. Marine Ecology Progress Series 481: 121-132.
Donovan MK, AM Friedlander, EE DeMartini, MJ Donahue, ID Williams. 2013. Demographic patterns in the peacock grouper (Cephalopholis argus), an introduced Hawaiian reef fish. Environmental Biology of Fishes. 96: 981-994.
Kloepper LN, PE Nachtigall, MJ Donahue, M Breese. 2012. Active echolocation beam focusing in the false killer whale, Pseudorca crassidens. Journal of Experimental Biology. 215. 1306-1312. See Inside JEB article.
Donahue MD, RA Desharnais, CD Robles, P Arriola. 2011. Mussel bed boundaries as dynamic equilibria: thresholds, phase shifts, and alternative states. The American Naturalist. 178(5): 612-625.
Robles CD, RA Desharnais, C Garza, MJ Donahue. 2010. Landscape patterns in boundary intensity: a case study in mussel beds. Landscape Ecology. 25: 745-759.
Donahue MJ, AM Nichols, CA Santamaria, PE League-Pike, CJ Krediet, KO Perez, and MJ Shulman. 2009. Predation risk, prey abundance, and the vertical distribution of three brachyuran crabs on Gulf of Maine shores. Journal of Crustacean Biology. 29(4): 523-531.
Krediet CJ and MJ Donahue. 2009. Growth-mortality trade-offs along a depth gradient in Cancer borealis. Journal of Experimental Marine Biology & Ecology. 373: 133-139.
Jayewardene D, MJ Donahue, C Birkeland. 2009. Effects of frequent fish predation on corals in Hawaii. Coral Reefs. 28(2): 499-506.
Robles CD, RA Desharnais, C Garza, MJ Donahue, and CA Martinez. 2009. Complex equilibria in the maintenance of boundaries: Experiments with mussel beds. Ecology. 90(4): 985-995.
Donahue MJ and CT Lee. 2008. Colonization. In Sven Erik Jørgensen and Brian D. Fath, eds, General Ecology. Vol.  of Encyclopedia of Ecology, 5 vols. pp. 672-678 Oxford: Elsevier.
Wood CL, JE Byers, KL Cottingham, I Altman, MJ Donahue, and A Blakeslee. 2007. Parasites alter community structure. Proceedings of the National Academy of Sciences.104: 9335-9339.
Eastwood, ME, MJ Donahue, and AE Fowler. 2007. Reconstructing effects of past biological invasions: invasive predators and competitors and niche shifts in the New England intertidal community. Biological Invasions 9: 297-307.
Donahue, MJ. 2006. Conspecific cueing and growth-mortality tradeoffs jointly lead to conspecific attraction. Oecologia. 149: 33-43. Appendix
Chesson P, MJ Donahue, B Melbourne, and AL Sears. 2005. Scale transition theory for understanding mechanisms in metacommunities. In M. Holyoak, M. Leibold, and R. Holt, editors. Metacommunties: spatial dynamics and ecological communities.
Melbourne B, AL Sears, MJ Donahue, and P Chesson. 2005. Applying scale transition theory to metacommunities in the field. In M. Holyoak, M. Leibold, and R. Holt, editors. Metacommunties: spatial dynamics and ecological communities.
Donahue MJ. 2004. Size-dependent competition in a gregarious porcelain crab Petrolisthes cinctipes (Anomura: Porcellanidae). Marine Ecology Progress Series. 267: 196-207.
Donahue MJ, M Holyoak, and C Feng. 2003. Patterns of dispersal and dynamics among habitat patches varying in quality. The American Naturalist. 162: 302-317.